Chenwei Wang

Postdoctoral Fellow

Chenwei Wang

Joined 2022

Publications (8)

Integrated proteogenomic and metabolomic profiling of acute myeloid leukemias to identify molecular subtypes and associated therapy targets.

Chu SA#, Hsiao Y#, Wang C#, Kyle JE#, Jain R, Deng Y, Gritsenko MA, Henry LE, Lei JT, Dou Y, Tercan B, Shi Z, Gondal MN, Tsai CF, Elizarraras JM, Chu RK, Yu F, Joshi SK, Jing X, Polasky DA, Weitz KK, Li GX, Paurus VL, Clendinen CS, Schepmoes AA, Lalli PM, Eder JG, Flores JE, Stratton KG, Pino JC, Posso C, Petyuk VA, Sagendorf TJ, Xu Y, Ibrahim OM, Moore RJ, Zhao R, Chen J, Monroe ME, Thiagarajan M, Hostetter G, Newton C, An E, Robles AI, Zhang X, Edwards NJ, Lu Y, Zhang H, Abdelhakim H, Piehowski PD, Mesri M, Smith RD, Kumar-Sinha C, Tognon CE, Dunlap J, Traer E, Ding L, Tyner JW, Chinnaiyan AM, Omenn GS, Rodland KD, Dhanasekaran SM, Gosline SJC, Nesvizhskii AI, Zhang B, Liu T, Cieslik MP.

Nat Cancer, 7(6):993-1015, 2026. (# first authors)

A 15-layer multi-omics analysis of gastric cancer ecotypes provides therapeutic insights.

Wang Y#, Olsen LK#, Jiao F, Wang C, Jiang KX, Dou Y, Hu Y, Jiao L, Chen W, Elizarraras JM, Khare P, Yu N, Zhu H, Chen L, Lih TM, Eser PÖ, Rodrigues FM, Shi Z, Zhang C, Yu C, Heiman DI, Liao Y, Shafer PW, Choi S, Choi JM, Savage SR, Jaehnig EJ, Lei JT, Sun Y, Peng CW, Sun Z, Morenkov P, Zhang K, Geffen Y, Hess J, Kumar-Sinha C, Mani DR, Ding L, Getz G, Li QK, Omenn GS, Le A, Hostetter G, Newton CJ, Cai S, Ketchum KA, Robles AI, Mesri M, Minoo P, Camargo MC, An E, Hruban RH, Liu Z, Thiagarajan M, Dohlman AB, Jin RU, Huang L, Chan DW, Zhang H, Zhang B.

Cell Rep Med, 7(5):102756, 2026. (# first authors)

DeepMVP: deep learning models trained on high-quality data accurately predict PTM sites and variant-induced alterations.

Wen B#, Wang C#, Li K#, Han P, Holt MV, Savage SR, Lei JT, Dou Y, Shi Z, Li Y, Zhang B.

Nat Methods, 22(9):1857-1867, 2025. (# first authors)

deep learning

Proteogenomic characterization unveils biomarkers associated with chemoresistance in muscle-invasive bladder cancer.

Holt MV#, Dou Y#, Young MN, Saltzman AB, Anurag M, Lei JT, Jain A, Leng M, Kim BJ, Dobrolecki LE, Faucher SF, Savage S, Wang C, Shi Z, Villanueva H, Kremers K, Drinnon KD, Castro PD, Ittmann MM, Khatani MM, Kim SH, Ellis MJ, Zhang B, Malovannaya A, Lerner SP.

Cell Rep Med., 6(8):102255, 2025. (# first authors)

proteogenomicscancer

NF1-depleted ER+ breast cancers are differentially sensitive to CDK4/6 inhibitors.

Zheng ZY, Chen A, Jaehnig EJ, Anurag M, Lei JT, Feng L, Wang C, Fandino D, Singh P, Kennedy H, Yadav G, Vollert CT, Tsai J, Chen X, Li Y, Lim B, Thompson A, Li S, Foulds CE, Zhang B, Ellis MJ, Chang EC.

Sci Transl Med., 17(813):eadq5492, 2025.

cancer

Proteomics Meets Dose Response: A New Paradigm for Deciphering Drug Effects.

Wang C, Zhang B.

Cancer Res., 84(16):2572-2574, 2024.

multi-omicsproteomics

Proteogenomic characterization of small cell lung cancer identifies biological insights and subtype-specific therapeutic strategies.

Liu Q, Zhang J, Guo C, Wang M, Wang C, Yan Y, Sun L, Wang D, Zhang L, Yu H, Hou L, Wu C, Zhu Y, Jiang G, Zhu H, Zhou Y, Fang S, Zhang T, Hu L, Li J, Liu Y, Zhang H, Zhang B, Ding L, Robles AI, Rodriguez H, Gao D, Ji H, Zhou H, Zhang P.

Cell, 187(1):184-203, 2024.

proteogenomicscancer

π-HuB: the proteomic navigator of the human body.

He F, Aebersold R, Baker MS, Bian X, Bo X, Chan DW, Chang C, Chen L, Chen X, Chen YJ, Cheng H, Collins BC, Corrales F, Cox J, E W, Van Eyk JE, Fan J, Faridi P, Figeys D, Gao GF, Gao W, Gao ZH, Goda K, Goh WWB, Gu D, Guo C, Guo T, He Y, Heck AJR, Hermjakob H, Hunter T, Iyer NG, Jiang Y, Jimenez CR, Joshi L, Kelleher NL, Li M, Li Y, Lin Q, Liu CH, Liu F, Liu GH, Liu Y, Liu Z, Low TY, Lu B, Mann M, Meng A, Moritz RL, Nice E, Ning G, Omenn GS, Overall CM, Palmisano G, Peng Y, Pineau C, Poon TCW, Purcell AW, Qiao J, Reddel RR, Robinson PJ, Roncada P, Sander C, Sha J, Song E, Srivastava S, Sun A, Sze SK, Tang C, Tang L, Tian R, Vizcaíno JA, Wang C, Wang C, Wang X, Wang X, Wang Y, Weiss T, Wilhelm M, Winkler R, Wollscheid B, Wong L, Xie L, Xie W, Xu T, Xu T, Yan L, Yang J, Yang X, Yates J, Yun T, Zhai Q, Zhang B, Zhang H, Zhang L, Zhang L, Zhang P, Zhang Y, Zheng YZ, Zhong Q, Zhu Y; π-HuB Consortium.

Nature, 636(8042):322-331, 2024.

multi-omicsproteomics