Alumni
Jing Li
2007 – 2010
Now: Professor, Shanghai Jiao Tong University, China
Postdoctoral Research Associate (2007–2010)
Publications (9)
Tumor-associated antigen prediction using a single-sample gene expression state inference algorithm.
Yi X, Zhao H, Hu S, Dong L, Dou Y, Li J, Gao Q, Zhang B.
Cell Rep Methods, 4(11):100906, 2024.
Liu Q, Zhang J, Guo C, Wang M, Wang C, Yan Y, Sun L, Wang D, Zhang L, Yu H, Hou L, Wu C, Zhu Y, Jiang G, Zhu H, Zhou Y, Fang S, Zhang T, Hu L, Li J, Liu Y, Zhang H, Zhang B, Ding L, Robles AI, Rodriguez H, Gao D, Ji H, Zhou H, Zhang P.
Cell, 187(1):184-203, 2024.
IRE1α silences dsRNA to prevent taxane-induced pyroptosis in triple-negative breast cancer.
Xu L, Peng F, Luo Q, Ding Y, Yuan F, Zheng L, He W, Zhang SS, Fu X, Liu J, Mutlu AS, Wang S, Nehring RB, Li X, Tang Q, Li C, Lv X, Dobrolecki LE, Zhang W, Han D, Zhao N, Jaehnig E, Wang J, Wu W, Graham DA, Li Y, Chen R, Peng W, Chen Y, Catic A, Zhang Z, Zhang B, Mustoe AM, Koong AC, Miles G, Lewis MT, Wang MC, Rosenberg SM, O’Malley BW, Westbrook TF, Xu H, Zhang XH, Osborne CK, Li JB, Ellis MJ, Rimawi MF, Rosen JM, Chen X.
Cell, 187(25):7248-7266, 2024.
Pharmaco-proteogenomic characterization of liver cancer organoids for precision oncology.
Ji S, Feng L, Fu Z, Wu G, Wu Y, Lin Y, Lu D, Song Y, Cui P, Yang Z, Sang C, Song G, Cai S, Li Y, Lin H, Zhang S, Wang X, Qiu S, Zhang X, Hua G, Li J, Zhou J, Dai Z, Wang X, Ding L, Wang P, Gao D, Zhang B, Rodriguez H, Fan J, Clevers H, Zhou H, Sun Y, Gao Q.
Sci Transl Med. 15(706):eadg3358, 2023.
Neurofibromin Is an Estrogen Receptor-α Transcriptional Co-repressor in Breast Cancer.
Zheng ZY, Anurag M, Lei JT, Cao J, Singh P, Peng J, Kennedy H, Nguyen NC, Chen Y, Lavere P, Li J, Du XH, Cakar B, Song W, Kim BJ, Shi J, Seker S, Chan DW, Zhao GQ, Chen X, Banks KC, Lanman RB, Shafaee MN, Zhang XH, Vasaikar S, Zhang B, Hilsenbeck SG, Li W, Foulds CE, Ellis MJ, Chang EC.
Cancer Cell, 37(3):387-402, 2020.
Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma.
Gao Q, Zhu H, Dong L, Shi W, Chen R, Song Z, Huang C, Li J, Dong X, Zhou Y, Liu Q, Ma L, Wang X, Zhou J, Liu Y, Boja E, Robles AI, Ma W, Wang P, Li Y, Ding L, Wen B, Zhang B, Rodriguez H, Gao D, Zhou H, Fan J.
Cell, 179(2):561-577, 2019
CanProVar 2.0: An Updated Database of Human Cancer Proteome Variation.
Zhang M, Wang B, Xu J, Wang X, Xie L, Zhang B@, Li Y@, Li J@.
J Proteome Res, 16(2):421-432, 2017 (@ corresponding authors)
Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data.
Liu Q, Guo Y, Li J, Long J, Zhang B, Shyr, Y.
BMC Genomics, 13(Suppl 8):S8, 2012
A bioinformatics workflow for variant peptide detection in shotgun proteomics.
Li J, Su Z, Ma ZQ, Slebos RJ, Halvey P, Tabb DL, Liebler DC, Pao W, Zhang B.
Mol Cell Proteomics, 10:M110.006536, 2011