John Elizarraras

Integrated proteogenomic and metabolomic profiling of acute myeloid leukemias to identify molecular subtypes and associated therapy targets.

Chu SA^#, Hsiao Y^#, Wang C^#, Kyle JE^#, Jain R, Deng Y, Gritsenko MA, Henry LE, Lei JT, Dou Y, Tercan B, Shi Z, Gondal MN, Tsai CF, Elizarraras JM, Chu RK, Yu F, Joshi SK, Jing X, Polasky DA, Weitz KK, Li GX, Paurus VL, Clendinen CS, Schepmoes AA, Lalli PM, Eder JG, Flores JE, Stratton KG, Pino JC, Posso C, Petyuk VA, Sagendorf TJ, Xu Y, Ibrahim OM, Moore RJ, Zhao R, Chen J, Monroe ME, Thiagarajan M, Hostetter G, Newton C, An E, Robles AI, Zhang X, Edwards NJ, Lu Y, Zhang H, Abdelhakim H, Piehowski PD, Mesri M, Smith RD, Kumar-Sinha C, Tognon CE, Dunlap J, Traer E, Ding L, Tyner JW, Chinnaiyan AM, Omenn GS, Rodland KD, Dhanasekaran SM, Gosline SJC, Nesvizhskii AI, Zhang B, Liu T, Cieslik MP.

Nat Cancer, 7(6):993-1015, 2026. (# first authors)

A 15-layer multi-omics analysis of gastric cancer ecotypes provides therapeutic insights.

Wang Y^#, Olsen LK^#, Jiao F, Wang C, Jiang KX, Dou Y, Hu Y, Jiao L, Chen W, Elizarraras JM, Khare P, Yu N, Zhu H, Chen L, Lih TM, Eser PÖ, Rodrigues FM, Shi Z, Zhang C, Yu C, Heiman DI, Liao Y, Shafer PW, Choi S, Choi JM, Savage SR, Jaehnig EJ, Lei JT, Sun Y, Peng CW, Sun Z, Morenkov P, Zhang K, Geffen Y, Hess J, Kumar-Sinha C, Mani DR, Ding L, Getz G, Li QK, Omenn GS, Le A, Hostetter G, Newton CJ, Cai S, Ketchum KA, Robles AI, Mesri M, Minoo P, Camargo MC, An E, Hruban RH, Liu Z, Thiagarajan M, Dohlman AB, Jin RU, Huang L, Chan DW, Zhang H, Zhang B.

Cell Rep Med, 7(5):102756, 2026. (# first authors)

Mapping the functional network of human cancer through machine learning and pan-cancer proteogenomics.

Shi Z^#, Lei JT^#, Elizarraras JM, Zhang B.

Nat Cancer, 6(1):205-222, 2025. (# first authors)

WebGestalt 2024: faster gene set analysis and new support for metabolomics and multi-omics.

Elizarraras JM, Liao Y, Shi Z, Zhu Q, Pico AR, Zhang B.

Nucleic Acids Res., 52(W1):W415-W421, 2024.

ClinicalOmicsDB: exploring molecular associations of oncology drug responses in clinical trials.

Moon CI^#, Elizarraras JM^#, Lei JT, Jia B, Zhang B.

Nucleic Acids Res, 52(D1):D1201-D1209, 2024. (# first authors)